PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28180.3 Da    PI: 9.6981
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgkly+++s
  XP_012568390.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGIIIFSSTGKLYDFAS 59
                    8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.833161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.10E-42276No hitNo description
SuperFamilySSF554553.4E-31280IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2384157IPR002487Transcription factor, K-box
PROSITE profilePS5129715.50586198IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGIIIFSS TGKLYDFAST  60
SMRSVIDRFN KSKEESNQLG NAASEIKFWQ REAAMLRQQL HNLQESHRQI MGEELSGLTV  120
KELRSLENQL EISLRGVRMK KDQLLTNEIQ ELNRKVSPEM EKLRTYSLFK TYFYILQGDI  180
IQQENEELYK KVNLICQENM ELKKVYGTKH ENGINRNSVF TVSLDIEDNL HVPVNLQLSQ  240
PQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D1e-18274173MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C1e-18274173MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B1e-18274173MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A1e-18274173MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J2e-18282181Myocyte-specific enhancer factor 2A
3p57_I2e-18282181Myocyte-specific enhancer factor 2A
3p57_D2e-18282181Myocyte-specific enhancer factor 2A
3p57_C2e-18282181Myocyte-specific enhancer factor 2A
3p57_B2e-18282181Myocyte-specific enhancer factor 2A
3p57_A2e-18282181Myocyte-specific enhancer factor 2A
3kov_J2e-18282181Myocyte-specific enhancer factor 2A
3kov_I2e-18282181Myocyte-specific enhancer factor 2A
3kov_B2e-18282181Myocyte-specific enhancer factor 2A
3kov_A2e-18282181Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMSU919641e-134U91964.1 Medicago sativa MADS-box protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568389.11e-179PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_012568390.11e-179PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP491e-101MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLK7M7U51e-126K7M7U5_SOYBN; Uncharacterized protein
STRINGGLYMA14G36221.11e-126(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-99AGAMOUS-like 16